changed defaults for filter.seqs()

[mothur.git] / rarefactsharedcommand.h

diff --git a/rarefactsharedcommand.h b/rarefactsharedcommand.h
index a0afb9607184e4d6e522fe92003047616e07c968..1935398ac1c312020e03edc32b30fc7ce10045fb 100644 (file)
--- a/rarefactsharedcommand.h
+++ b/rarefactsharedcommand.h
@@ -9,16 +9,11 @@
  *
  */
 
-#include <iostream>
-#include <fstream>
-#include <vector>
 #include "command.hpp"
-#include "sharedordervector.h"
-#include "sharedlistvector.h"
 #include "inputdata.h"
 #include "rarefact.h"
 #include "display.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 #include "validcalculator.h"
 
 /* The rarefaction.shared() command:
@@ -44,9 +39,8 @@ public:
        
 private:
        GlobalData* globaldata;
-       SharedListVector* SharedList;
-       ReadMatrix* read;
-       SharedOrderVector* order;
+       ReadOTUFile* read;
+       vector<SharedRAbundVector*> lookup;
        InputData* input;
        ValidCalculators* validCalculator;
        Rarefact* rCurve;