fileNameRoot = getRootName(globaldata->inputFileName);
format = globaldata->getFormat();
validCalculator = new ValidCalculators();
- util = new SharedUtil();
int i;
for (i=0; i<globaldata->Estimators.size(); i++) {
//**********************************************************************************************************************
RareFactSharedCommand::~RareFactSharedCommand(){
- delete order;
delete input;
delete rCurve;
delete read;
- delete util;
}
//**********************************************************************************************************************
read->read(&*globaldata);
input = globaldata->ginput;
- order = input->getSharedOrderVector();
-
- //set users groups
- util->setGroups(globaldata->Groups, globaldata->gGroupmap->namesOfGroups, "rarefact");
+ lookup = input->getSharedRAbundVectors();
+
+ if (lookup.size() < 2) {
+ cout << "I cannot run the command without at least 2 valid groups.";
+ for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
+ return 0;
+ }
+
- while(order != NULL){
+ while(lookup[0] != NULL){
- if(globaldata->allLines == 1 || globaldata->lines.count(count) == 1 || globaldata->labels.count(order->getLabel()) == 1){
+ if(globaldata->allLines == 1 || globaldata->lines.count(count) == 1 || globaldata->labels.count(lookup[0]->getLabel()) == 1){
//create collectors curve
- rCurve = new Rarefact(order, rDisplays);
+ rCurve = new Rarefact(lookup, rDisplays);
convert(globaldata->getFreq(), freq);
convert(globaldata->getIters(), nIters);
rCurve->getSharedCurve(freq, nIters);
delete rCurve;
- cout << order->getLabel() << '\t' << count << endl;
+ cout << lookup[0]->getLabel() << '\t' << count << endl;
}
+ //prevent memory leak
+ for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
+
//get next line to process
- delete order;
- order = input->getSharedOrderVector();
+ lookup = input->getSharedRAbundVectors();
count++;
}