class RareFactCommand : public Command {
public:
- RareFactCommand(string);
+ RareFactCommand(string);
+ RareFactCommand();
~RareFactCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
InputData* input;
ValidCalculators* validCalculator;
Rarefact* rCurve;
- int nIters, abund;
+ int nIters, abund, processors;
float freq;
bool abort, allLines;
set<string> labels; //holds labels to be used
string label, calc;
vector<string> Estimators;
- vector<string> inputFileNames;
+ vector<string> inputFileNames, outputNames;
vector<string> groups;
+ map<string, vector<string> > outputTypes;
string outputDir;
vector<string> parseSharedFile(string);