class RareFactCommand : public Command {
public:
- RareFactCommand(string);
+ RareFactCommand(string);
+ RareFactCommand();
~RareFactCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
InputData* input;
ValidCalculators* validCalculator;
Rarefact* rCurve;
- int freq, nIters, abund;
-
+ int nIters, abund, processors;
+ float freq;
+
bool abort, allLines;
set<string> labels; //holds labels to be used
string label, calc;
vector<string> Estimators;
+ vector<string> inputFileNames, outputNames;
+ vector<string> groups;
+ map<string, vector<string> > outputTypes;
+ string outputDir;
+
+ vector<string> parseSharedFile(string);
+
};