string getCommandCategory() { return "OTU-Based Approaches"; }
string getHelpString();
string getCitation() { return "Magurran AE (2004). Measuring biological diversity. Blackwell Pub.: Malden, Ma. \nhttp://www.mothur.org/wiki/Rarefaction.single"; }
-
+ string getDescription() { return "generate intra-sample rarefaction curves using a re-sampling without replacement approach"; }
+
int execute();
void help() { m->mothurOut(getHelpString()); }
int nIters, abund, processors;
float freq;
- bool abort, allLines;
+ bool abort, allLines, groupMode;
set<string> labels; //holds labels to be used
string label, calc, sharedfile, listfile, rabundfile, sabundfile, format, inputfile;
vector<string> Estimators;
string outputDir;
vector<string> parseSharedFile(string);
+ vector<string> createGroupFile(vector<string>&, map<int, string>);
};
#endif