added forward and reverse barcodes to trim.seqs to process illumina seqs

[mothur.git] / rarefactcommand.h

diff --git a/rarefactcommand.h b/rarefactcommand.h
index 36288927ac2d5bb575378329c9c0a6b66f1db5c4..0e77a277e6ad7cda962a4c9476945f6b2aa6b557 100644 (file)
--- a/rarefactcommand.h
+++ b/rarefactcommand.h
@@ -50,8 +50,8 @@ private:
        vector<string> groups;
        string outputDir;
        
-       vector<string> parseSharedFile(string);
-       vector<string> createGroupFile(vector<string>&);
+       vector<string> parseSharedFile(string, map<string, set<int> >&);
+       vector<string> createGroupFile(vector<string>&, map<int, string>);
 };
 
 #endif