update .gitignore

[mothur.git] / rarefactcommand.h

diff --git a/rarefactcommand.h b/rarefactcommand.h
index 9c7e1ed34fcffebaf73f4499bd6637d0d36c2b68..09de39fddfe89bc48fd9397a4e0fffc5e32d495a 100644 (file)
--- a/rarefactcommand.h
+++ b/rarefactcommand.h
@@ -26,8 +26,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "rarefaction.single";          }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getOutputFileNameTag(string, string);
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "Magurran AE (2004). Measuring biological diversity. Blackwell Pub.: Malden, Ma. \nhttp://www.mothur.org/wiki/Rarefaction.single"; }
        string getDescription()         { return "generate intra-sample rarefaction curves using a re-sampling without replacement approach"; }
 
@@ -40,7 +41,7 @@ private:
        OrderVector* order;
        InputData* input;
        Rarefact* rCurve;
-       int nIters, abund, processors;
+       int nIters, abund, processors, alpha;
        float freq;
        
        bool abort, allLines, groupMode;