vector<string> setParameters();
string getCommandName() { return "rarefaction.single"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "Magurran AE (2004). Measuring biological diversity. Blackwell Pub.: Malden, Ma. \nhttp://www.mothur.org/wiki/Rarefaction.single"; }
string getDescription() { return "generate intra-sample rarefaction curves using a re-sampling without replacement approach"; }
OrderVector* order;
InputData* input;
Rarefact* rCurve;
- int nIters, abund, processors;
+ int nIters, abund, processors, alpha;
float freq;
bool abort, allLines, groupMode;