vector<string> setParameters();
string getCommandName() { return "rarefaction.single"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "Magurran AE (2004). Measuring biological diversity. Blackwell Pub.: Malden, Ma. \nhttp://www.mothur.org/wiki/Rarefaction.single"; }
string getDescription() { return "generate intra-sample rarefaction curves using a re-sampling without replacement approach"; }
vector<string> groups;
string outputDir;
- vector<string> parseSharedFile(string);
- vector<string> createGroupFile(vector<string>&);
+ vector<string> parseSharedFile(string, map<string, set<int> >&);
+ vector<string> createGroupFile(vector<string>&, map<int, string>);
};
#endif