splitAtDash(calc, Estimators);
string temp;
- temp = validParameter.validFile(parameters, "freq", false); if (temp == "not found") { temp = "0.10"; }
+ temp = validParameter.validFile(parameters, "freq", false); if (temp == "not found") { temp = "100"; }
convert(temp, freq);
temp = validParameter.validFile(parameters, "abund", false); if (temp == "not found") { temp = "10"; }
m->mothurOut("The rarefaction.single command can only be executed after a successful read.otu WTIH ONE EXECEPTION.\n");
m->mothurOut("The rarefaction.single command can be executed after a successful cluster command. It will use the .list file from the output of the cluster.\n");
m->mothurOut("The rarefaction.single command parameters are label, iters, freq, calc and abund. No parameters are required. \n");
- m->mothurOut("The freq parameter is used indicate when to output your data. It is a percentage of the number of sequences. By default it is set to 0.10, meaning 10%. \n");
+ m->mothurOut("The freq parameter is used indicate when to output your data, by default it is set to 100. But you can set it to a percentage of the number of sequence. For example freq=0.10, means 10%. \n");
m->mothurOut("The rarefaction.single command should be in the following format: \n");
m->mothurOut("rarefaction.single(label=yourLabel, iters=yourIters, freq=yourFreq, calc=yourEstimators).\n");
m->mothurOut("Example rarefaction.single(label=unique-.01-.03, iters=10000, freq=10, calc=sobs-rchao-race-rjack-rbootstrap-rshannon-rnpshannon-rsimpson).\n");