mods to seq.errror

[mothur.git] / quitcommand.cpp

diff --git a/quitcommand.cpp b/quitcommand.cpp
index 6b90f4b15c1cf64ae04bed98db42138f0edcf2d7..462fe8fbf43e7f47a93ddefeb1058095cf636f86 100644 (file)
--- a/quitcommand.cpp
+++ b/quitcommand.cpp
@@ -9,9 +9,60 @@
 
 #include "quitcommand.h"
 
+//**********************************************************************************************************************
+vector<string> QuitCommand::getValidParameters(){      
+       try {
+               vector<string> myArray; 
+               return myArray;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "QuitCommand", "getValidParameters");
+               exit(1);
+       }
+}
+//**********************************************************************************************************************
+vector<string> QuitCommand::getRequiredParameters(){   
+       try {
+               vector<string> myArray;
+               return myArray;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "QuitCommand", "getRequiredParameters");
+               exit(1);
+       }
+}
+//**********************************************************************************************************************
+vector<string> QuitCommand::getRequiredFiles(){        
+       try {
+               vector<string> myArray;
+               return myArray;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "QuitCommand", "getRequiredFiles");
+               exit(1);
+       }
+}
 //**********************************************************************************************************************
 
-QuitCommand::QuitCommand(){}
+QuitCommand::QuitCommand(string option) {
+               abort = false; calledHelp = false;   
+               
+               //allow user to run help
+               if(option == "help") { help(); abort = true; calledHelp = true; }
+
+}
+//**********************************************************************************************************************
+
+void QuitCommand::help(){
+       try {
+                m->mothurOut("The quit command will terminate mothur and should be in the following format: \n"); 
+                m->mothurOut("quit() or quit\n\n");
+       }
+       catch(exception& e) {
+               m->errorOut(e, "QuitCommand", "help");
+               exit(1);
+       }
+}
 
 //**********************************************************************************************************************
 
@@ -20,6 +71,7 @@ QuitCommand::~QuitCommand(){}
 //**********************************************************************************************************************
 
 int QuitCommand::execute(){
+       if (abort == true) { return 0; }
        return 1;
 }