more changes to error.seqs command and quality scores classses

[mothur.git] / qualityscores.h

diff --git a/qualityscores.h b/qualityscores.h
index 5db43113f1b4aedea7761cd4ad7bcc3575542919..8f2105a1d095bfe94502d28ae387b89e8da9ed7c 100644 (file)
--- a/qualityscores.h
+++ b/qualityscores.h
@@ -29,6 +29,10 @@ public:
        bool stripQualRollingAverage(Sequence&, double);
        bool stripQualWindowAverage(Sequence&, int, int, double);
        bool cullQualAverage(Sequence&, double);
+       void updateQScoreErrorMap(map<char, vector<int> >&, string, int, int, int);
+       void updateForwardMap(vector<vector<int> >&, int, int, int);
+       void updateReverseMap(vector<vector<int> >&, int, int, int);
+       
 private:
        
        double calculateAverage();