added sequence name to error string in fastq.info. Changed np_shannon to npshannon.

[mothur.git] / qualityscores.h

diff --git a/qualityscores.h b/qualityscores.h
index 8f2105a1d095bfe94502d28ae387b89e8da9ed7c..8183d51cc2e68466f186a354e315578d4175ad49 100644 (file)
--- a/qualityscores.h
+++ b/qualityscores.h
@@ -10,6 +10,8 @@
  *
  */
 
+//DataStructure for a quality file.
+
 
 #include "mothur.h"
 #include "mothurout.h"
@@ -20,8 +22,10 @@
 class QualityScores {
 public:
        QualityScores();
-       QualityScores(ifstream&, int);
+       QualityScores(ifstream&);
        string getName();
+       
+       vector<int> getQualityScores() { return qScores; }
        void printQScores(ofstream&);
        void trimQScores(int, int);
        void flipQScores();