int seqLength = sequence.getNumBases();
if(seqName != sequence.getName()){
- m->mothurOut("sequence name mismatch btwn fasta: " + sequence.getName() + " and qual file: " + seqName);
- m->mothurOutEndLine();
+ m->mothurOut("sequence name mismatch between fasta: " + sequence.getName() + " and qual file: " + seqName);
+ m->mothurOutEndLine();
}
int end = windowSize;
double windowAverage = windowSum / (double)(end-start);
if(windowAverage < qThreshold){
- end = start;
+ end = end - stepSize;
break;
}
start += stepSize;