some minor typo

[mothur.git] / preclustercommand.h

diff --git a/preclustercommand.h b/preclustercommand.h
index e63afa6c8af8ee442e267714fcfccd140d4f79dd..56bf1f36deaaea02b1357b1d229d87ad96bcafaa 100644 (file)
--- a/preclustercommand.h
+++ b/preclustercommand.h
@@ -48,8 +48,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "pre.cluster";                         }
        string getCommandCategory()             { return "Sequence Processing";         }
-       string getOutputFileNameTag(string, string);
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011).  Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.  PLoS ONE.  6:e27310.\nhttp://www.mothur.org/wiki/Pre.cluster"; }
        string getDescription()         { return "implements a pseudo-single linkage algorithm with the goal of removing sequences that are likely due to pyrosequencing errors"; }
 
@@ -78,7 +79,6 @@ private:
        map<string, int>::iterator itSize; 
 //     map<string, bool> active; //maps sequence name to whether it has already been merged or not.
        vector<string> outputNames;
-       map<string, vector<string> > outputTypes;
        
        int readFASTA();
        void readNameFile();