PDS: update citation fields

[mothur.git] / preclustercommand.h

diff --git a/preclustercommand.h b/preclustercommand.h
index 3712302bee105cec37e6834dbc2b017584c9e2d5..082bff27e25209fc7db92404388ae40592d45bff 100644 (file)
--- a/preclustercommand.h
+++ b/preclustercommand.h
@@ -41,8 +41,9 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "pre.cluster";                         }
        string getCommandCategory()             { return "Sequence Processing";         }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Pre.cluster"; }
+       string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011).  Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.  PLoS ONE.  6:e27310.\nhttp://www.mothur.org/wiki/Pre.cluster"; }
        string getDescription()         { return "implements a pseudo-single linkage algorithm with the goal of removing sequences that are likely due to pyrosequencing errors"; }
 
        
@@ -113,7 +114,7 @@ struct preClusterData {
 };
 
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyPreclusterThreadFunction(LPVOID lpParam){ 
        preClusterData* pDataArray;