changed int to pid_t type in fork(). roughed in get.mimarkscommand.

[mothur.git] / prcseqscommand.cpp

diff --git a/prcseqscommand.cpp b/prcseqscommand.cpp
index 6a4df6388683b1cda6aa5aa41d1ec3d2d672a15f..ee15bed0a2362a9f9921cd45789ebb83384c0ea5 100644 (file)
--- a/prcseqscommand.cpp
+++ b/prcseqscommand.cpp
@@ -436,18 +436,18 @@ int PcrSeqsCommand::createProcesses(string filename, string goodFileName, string
         
                //loop through and create all the processes you want
                while (process != processors) {
-                       int pid = fork();
+                       pid_t pid = fork();
                        
                        if (pid > 0) {
                                processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
                                process++;
                        }else if (pid == 0){
-                string locationsFile = toString(getpid()) + ".temp";
-                               num = driverPcr(filename, goodFileName + toString(getpid()) + ".temp", badFileName + toString(getpid()) + ".temp", locationsFile, badSeqNames, lines[process], pstart, adjustNeeded);
+                string locationsFile = m->mothurGetpid(process) + ".temp";
+                               num = driverPcr(filename, goodFileName + m->mothurGetpid(process) + ".temp", badFileName + m->mothurGetpid(process) + ".temp", locationsFile, badSeqNames, lines[process], pstart, adjustNeeded);
                                
                                //pass numSeqs to parent
                                ofstream out;
-                               string tempFile = filename + toString(getpid()) + ".num.temp";
+                               string tempFile = filename + m->mothurGetpid(process) + ".num.temp";
                                m->openOutputFile(tempFile, out);
                 out << pstart << '\t' << adjustNeeded << endl;
                                out << num << '\t' << badSeqNames.size() << endl;
@@ -464,7 +464,7 @@ int PcrSeqsCommand::createProcesses(string filename, string goodFileName, string
                        }
                }
                
-        string locationsFile = toString(getpid()) + ".temp";
+        string locationsFile = m->mothurGetpid(process) + ".temp";
         num = driverPcr(filename, goodFileName, badFileName, locationsFile, badSeqNames, lines[0], pstart, adjustNeeded);
         
                //force parent to wait until all the processes are done