#include "decalc.h"
/***********************************************************/
-//This class was created using the algorythms described in the
+//This class was created using the algorithms described in the
// "At Least 1 in 20 16S rRNA Sequence Records Currently Held in the Public Repositories is Estimated To Contain Substantial Anomalies" paper
//by Kevin E. Ashelford 1, Nadia A. Chuzhanova 3, John C. Fry 1, Antonia J. Jones 2 and Andrew J. Weightman 1.
~Pintail();
int getChimeras(Sequence*);
- int print(ostream&, ostream&);
+ Sequence print(ostream&, ostream&);
void setCons(string c) { consfile = c; }
void setQuantiles(string q) { quanfile = q; }
#ifdef USE_MPI
- int print(MPI_File&, MPI_File&);
+ Sequence print(MPI_File&, MPI_File&);
#endif
private:
float DE; //DE is the deviaation for query
vector<float> probabilityProfile;
vector< vector<float> > quantiles; //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
- vector< vector<quanMember> > quantilesMembers; //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
+ vector< vector<float> > quantilesMembers; //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
set<int> h;
string mergedFilterString;