fixed splash page citation

[mothur.git] / pintail.h

diff --git a/pintail.h b/pintail.h
index ddfba85efdf4d3d424443ed1fba1ecee6ae101eb..aada728413ffbfc9cd3cde1bedb5d07ea492e985 100644 (file)
--- a/pintail.h
+++ b/pintail.h
@@ -14,6 +14,7 @@
 #include "dist.h"
 #include "decalc.h"
 
+/***********************************************************/
 //This class was created using the algorythms described in the 
 // "At Least 1 in 20 16S rRNA Sequence Records Currently Held in the Public Repositories is Estimated To Contain Substantial Anomalies" paper 
 //by Kevin E. Ashelford 1, Nadia A. Chuzhanova 3, John C. Fry 1, Antonia J. Jones 2 and Andrew J. Weightman 1.
@@ -35,17 +36,10 @@ class Pintail : public Chimera {
                
        private:
        
-               struct linePair {
-                       int start;
-                       int end;
-                       linePair(int i, int j) : start(i), end(j) {}
-                       linePair(){}
-               };
-
                Dist* distcalculator;
                DeCalculator* decalc;
                int iters;
-               string fastafile, templateFile, consfile, quanfile;
+               string fastafile, templateFile, consfile;
                
                
                vector<linePair*> lines;
@@ -77,7 +71,6 @@ class Pintail : public Chimera {
                
                
                vector<float> readFreq();
-               vector< vector<float> > readQuantiles();
                vector<Sequence*> findPairs(int, int);
                        
                void createProcessesSpots();