added MPI to dist.seqs command

[mothur.git] / pintail.h

diff --git a/pintail.h b/pintail.h
index efb8ba6aa31afcd9c12bb3a85cfa21d2cd8310aa..59d4feeec7fa3743a059b331db524b0df3fe48cf 100644 (file)
--- a/pintail.h
+++ b/pintail.h
@@ -28,7 +28,7 @@ class Pintail : public Chimera {
                ~Pintail();
                
                int getChimeras(Sequence*);
-               void print(ostream&);
+               int print(ostream&, ostream&);
                
                void setCons(string c)          { consfile = c;  }
                void setQuantiles(string q) { quanfile = q;  }
@@ -42,7 +42,7 @@ class Pintail : public Chimera {
                string fastafile, consfile;
                
                vector<linePair*> templateLines;
-               Sequence*querySeq;
+               Sequence* querySeq;
                                
                Sequence* bestfit;  //closest match to query in template
                
@@ -72,7 +72,7 @@ class Pintail : public Chimera {
                Sequence* findPairs(Sequence*);
                        
                void createProcessesQuan();
-               void doPrep();
+               int doPrep();
                
 };