added filter.shared command. fixed lci and uci for thetayc calc

[mothur.git] / phylotypecommand.h

diff --git a/phylotypecommand.h b/phylotypecommand.h
index a0411308e01121af1a56a68dd28218b421598cbc..7fe10af58dde8ae842be2496376b3569df49bd29 100644 (file)
--- a/phylotypecommand.h
+++ b/phylotypecommand.h
@@ -26,9 +26,12 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "phylotype";           }
        string getCommandCategory()             { return "Clustering";          }
+       
        string getHelpString(); 
+    string getOutputPattern(string);   
        string getCitation() { return "http://www.mothur.org/wiki/Phylotype"; }
-       
+       string getDescription()         { return "cluster your sequences into OTUs based on their classifications"; }
+
        int execute();
        void help() { m->mothurOut(getHelpString()); }