public:
PhylotypeCommand(string);
- ~PhylotypeCommand();
- int execute();
- void help();
+ PhylotypeCommand();
+ ~PhylotypeCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "phylotype"; }
+ string getCommandCategory() { return "Clustering"; }
+ string getHelpString();
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
private:
bool abort, allLines;
set<string> labels; //holds labels to be used
int cutoff;
map<string, string> namemap;
+ vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
map<int, int> currentNodes;
map<int, int> parentNodes;