added MPI to dist.seqs command

[mothur.git] / phylotree.h

diff --git a/phylotree.h b/phylotree.h
index 6e5b58d85c2430807af15e0345a36fece9f0f90e..345e2e72228d711942e2f0d036eed0bda8c8fa67 100644 (file)
--- a/phylotree.h
+++ b/phylotree.h
@@ -11,6 +11,7 @@
  */
 
 #include "mothur.h"
+#include "mothurout.h"
 
 /**************************************************************************************************/
 
@@ -38,10 +39,13 @@ public:
        vector<int> getGenusNodes();
        void binUnclassified();
                
-       TaxNode get(int i)                              {       return tree[i]; }
+       TaxNode get(int i)                              {       return tree[i];                                                 }
        TaxNode get(string seqName)             {       return tree[name2Taxonomy[seqName]];    }
-       int getIndex(string seqName)    {       return name2Taxonomy[seqName];  }
-       string getName(int i)                   {       return tree[i].name;    }
+       int getIndex(string seqName)    {       return name2Taxonomy[seqName];                  }
+       string getName(int i)                   {       return tree[i].name;                                    }
+       string getFullTaxonomy(string);  //pass a sequence name return taxonomy
+       int getMaxLevel()                               {       return maxLevel;                                                }
+       
 private:
        string getNextTaxon(string&);
        vector<TaxNode> tree;
@@ -52,6 +56,7 @@ private:
        int numNodes;
        int numSeqs;
        int maxLevel;
+       MothurOut* m;
 };
 
 /**************************************************************************************************/