changes while testing.

[mothur.git] / phylosummary.cpp

diff --git a/phylosummary.cpp b/phylosummary.cpp
index 22e8e75ce7047e00b135483f16b566eb506a71fb..2f565150aabeec35cc8a3c03a459d8b85090550b 100644 (file)
--- a/phylosummary.cpp
+++ b/phylosummary.cpp
@@ -25,7 +25,7 @@ PhyloSummary::PhyloSummary(string refTfile, string groupFile){
                }
                                
                //check for necessary files
-               string taxFileNameTest = refTfile.substr(0,refTfile.find_last_of(".")+1) + "tree.sum";
+               string taxFileNameTest = m->getFullPathName((refTfile.substr(0,refTfile.find_last_of(".")+1) + "tree.sum"));
                ifstream FileTest(taxFileNameTest.c_str());
                
                if (!FileTest) { 
@@ -121,6 +121,7 @@ string PhyloSummary::getNextTaxon(string& heirarchy){
 
 int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){
        try {
+                               
                numSeqs++;
                
                map<string, int>::iterator childPointer;