}
//check for necessary files
- string taxFileNameTest = refTfile.substr(0,refTfile.find_last_of(".")+1) + "tree.sum";
+ string taxFileNameTest = m->getFullPathName((refTfile.substr(0,refTfile.find_last_of(".")+1) + "tree.sum"));
ifstream FileTest(taxFileNameTest.c_str());
if (!FileTest) {
int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){
try {
+
numSeqs++;
map<string, int>::iterator childPointer;