mod .gitignore

[mothur.git] / phylodiversity.h

diff --git a/phylodiversity.h b/phylodiversity.h
index 131a63cd31b799f9e60eae28fcfcf9beed732d9f..a789efad2bff1549660dea79f05a1109c5953f20 100644 (file)
--- a/phylodiversity.h
+++ b/phylodiversity.h
@@ -12,28 +12,23 @@
  */
 
 #include "treemap.h"
-#include "globaldata.hpp"
 #include "mothurout.h"
 
-typedef vector<double> EstOutput; 
 
 /***********************************************************************/
 
 class PhyloDiversity  {
        
        public:
-               PhyloDiversity(TreeMap* t) : tmap(t) { globaldata = GlobalData::getInstance();  m = MothurOut::getInstance(); }
+               PhyloDiversity(TreeMap* t) : tmap(t) {  m = MothurOut::getInstance(); }
                ~PhyloDiversity() {};
                
-               EstOutput getValues(Tree*, vector<int>);
-               void setTotalGroupBranchLengths(Tree*);
+               //int getValues(Tree*, vector<int>, vector< vector< float> >&);
+               
                
        private:
-               GlobalData* globaldata;
                MothurOut* m;
-               EstOutput data;
                TreeMap* tmap;
-               map<string, float> groupTotals;
 };
 
 /***********************************************************************/