vector<string> setParameters();
string getCommandName() { return "pcr.seqs"; }
string getCommandCategory() { return "Sequence Processing"; }
- string getOutputFileNameTag(string, string);
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Pcr.seqs"; }
string getDescription() { return "pcr.seqs"; }
}
set<int> lengths;
- pDataArray->count = pDataArray->fend;
+
for(int i = 0; i < pDataArray->fend; i++){ //end is the number of sequences to process
-
+ pDataArray->count++;
if (pDataArray->m->control_pressed) { break; }
Sequence currSeq(inFASTA); pDataArray->m->gobble(inFASTA);