Merge remote-tracking branch 'origin/master'

[mothur.git] / pcrseqscommand.h

diff --git a/pcrseqscommand.h b/pcrseqscommand.h
index 45ce6f3f153e6020f00c859b1928cc1d74ea2a55..baeca4eedc66ac9aa38acaa4b7d65bfebca56410 100644 (file)
--- a/pcrseqscommand.h
+++ b/pcrseqscommand.h
@@ -25,6 +25,7 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "pcr.seqs";    }
        string getCommandCategory()             { return "Sequence Processing";         }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Pcr.seqs"; }
        string getDescription()         { return "pcr.seqs"; }
@@ -45,7 +46,7 @@ private:
        bool getOligos(vector<vector<string> >&, vector<vector<string> >&, vector<vector<string> >&);
     bool abort, keepprimer, keepdots;
        string fastafile, oligosfile, taxfile, groupfile, namefile, ecolifile, outputDir, nomatch;
-       int start, end, pdiffs, processors, length;
+       int start, end, processors, length;
        
     vector<string> revPrimer, outputNames;
        vector<string> primers;