vector<string> setParameters();
string getCommandName() { return "pcr.seqs"; }
string getCommandCategory() { return "Sequence Processing"; }
+ string getOutputFileNameTag(string, string);
string getHelpString();
string getCitation() { return "http://www.mothur.org/wiki/Pcr.seqs"; }
string getDescription() { return "pcr.seqs"; }
bool getOligos(vector<vector<string> >&, vector<vector<string> >&, vector<vector<string> >&);
bool abort, keepprimer, keepdots;
string fastafile, oligosfile, taxfile, groupfile, namefile, ecolifile, outputDir, nomatch;
- int start, end, pdiffs, processors, length;
+ int start, end, processors, length;
vector<string> revPrimer, outputNames;
vector<string> primers;