bool getOligos(vector<vector<string> >&, vector<vector<string> >&, vector<vector<string> >&);
bool abort, keepprimer, keepdots;
string fastafile, oligosfile, taxfile, groupfile, namefile, ecolifile, outputDir, nomatch;
- int start, end, pdiffs, processors, length;
+ int start, end, processors, length;
vector<string> revPrimer, outputNames;
vector<string> primers;