public:
PCOACommand(string);
PCOACommand();
- ~PCOACommand();
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+ ~PCOACommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "pcoa"; }
+ string getCommandCategory() { return "Hypothesis Testing"; }
+ string getHelpString();
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
private:
bool abort, metric;
string phylipfile, filename, fbase, outputDir;
vector<string> outputNames;
- map<string, vector<string> > outputTypes;
LinearAlgebra linearCalc;
void get_comment(istream&, char, char);