private:
bool abort, metric;
- string phylipfile, columnfile, namefile, format, filename, fbase, outputDir;
- float cutoff, precision;
+ string phylipfile, filename, fbase, outputDir;
vector<string> outputNames;
map<string, vector<string> > outputTypes;
LinearAlgebra linearCalc;
void get_comment(istream&, char, char);
- int read_phylip(istream&, int, vector<string>&, vector<vector<double> >&);
- void read(string, vector<string>&, vector<vector<double> >&);
void recenter(double, vector<vector<double> >, vector<vector<double> >&);
void output(string, vector<string>, vector<vector<double> >&, vector<double>);