Parsimony* pars;
vector<string> groupComb; // AB. AC, BC...
string sumFile, randomtree, allGroups, outputDir;
- int iters, numGroups, numComp, counter;
+ int iters, numGroups, numComp, counter, processors;
vector<int> numEachGroup; //vector containing the number of sequences in each group the users wants for random distrib.
vector< vector<float> > userTreeScores; //scores for users trees for each comb.
vector< vector<float> > UScoreSig; //tree score signifigance when compared to random trees - percentage of random trees with that score or lower.