added sequence name to error string in fastq.info. Changed np_shannon to npshannon.

[mothur.git] / parsimonycommand.h

diff --git a/parsimonycommand.h b/parsimonycommand.h
index 274cac4e94f46b51aca95695f9fc4d7a4ba9c981..81fa99ba06c691f9e0ee06f4b73521655b046e8c 100644 (file)
--- a/parsimonycommand.h
+++ b/parsimonycommand.h
@@ -29,7 +29,9 @@ public:
        string getCommandName()                 { return "parsimony";                           }
        string getCommandCategory()             { return "Hypothesis Testing";          }
        string getHelpString(); 
-       
+       string getCitation() { return "Slatkin M, Maddison WP (1989). A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123: 603-13. \nSlatkin M, Maddison WP (1990). Detecting isolation by distance using phylogenies of genes. Genetics 126: 249-60. \nMartin AP (2002). Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-82. \nSchloss PD, Handelsman J (2006). Introducing TreeClimber, a test to compare microbial community structure. Appl Environ Microbiol 72: 2379-84.\nhttp://www.mothur.org/wiki/Parsimony"; }
+       string getDescription()         { return "generic test that describes whether two or more communities have the same structure"; }
+
        int execute();
        void help() { m->mothurOut(getHelpString()); }