fixed parsimony for groups

[mothur.git] / parsimonycommand.h

diff --git a/parsimonycommand.h b/parsimonycommand.h
index bd52fa6a74b66a0700316ebb069519582d0b8733..2881dc61e200540588691de3f205420139510561 100644 (file)
--- a/parsimonycommand.h
+++ b/parsimonycommand.h
@@ -28,6 +28,7 @@ class ParsimonyCommand : public Command {
                GlobalData* globaldata;
                vector<Tree*> T;           //user trees
                Tree* randT;  //random tree
+               Tree* copyUserTree; 
                TreeMap* tmap; 
                TreeMap* savetmap;
                Parsimony* pars;
@@ -51,6 +52,7 @@ class ParsimonyCommand : public Command {
                void printParsimonyFile();  
                void printUSummaryFile();
                void getUserInput();
+               void setGroups();
                
 };