added alignment code

[mothur.git] / parsimonycommand.cpp

diff --git a/parsimonycommand.cpp b/parsimonycommand.cpp
index b5c59e87104cb7d413ca4984fee751fbe8707ba4..56305e2260d4af19050dfc0832add36c1208d13e 100644 (file)
--- a/parsimonycommand.cpp
+++ b/parsimonycommand.cpp
@@ -36,12 +36,8 @@ ParsimonyCommand::ParsimonyCommand() {
                util->getCombos(groupComb, globaldata->Groups, numComp);
                globaldata->setGroups("");
                
-               //ABC
-               if (numComp != 1) {
-                       groupComb.push_back(allGroups);
-                       numComp++;
-               }
-
+               if (numGroups == 1) { numComp++; groupComb.push_back(allGroups); }
+               
                convert(globaldata->getIters(), iters);  //how many random trees to generate
                pars = new Parsimony(tmap);
                counter = 0;