public:
Parsimony(TreeMap* t) : tmap(t) {};
~Parsimony() {};
- EstOutput getValues(Tree*);
- EstOutput getValues(Tree*, string, string) { return data; };
+ EstOutput getValues(Tree*, int, string);
+ //EstOutput getValues(Tree*, string, string) { return data; }
private:
+ struct linePair {
+ int start;
+ int num;
+ linePair(int i, int j) : start(i), num(j) {}
+ };
+ vector<linePair> lines;
+
GlobalData* globaldata;
- Tree* copyTree;
EstOutput data;
TreeMap* tmap;
- map<string, int>::iterator it;
+ int processors;
+ string outputDir;
+
+ EstOutput driver(Tree*, vector< vector<string> >, int, int);
+ EstOutput createProcesses(Tree*, vector< vector<string> >);
};
/***********************************************************************/