added heatmap.sim command and changed heatmap to heatmap.bin

[mothur.git] / parsimony.h

diff --git a/parsimony.h b/parsimony.h
index b5d7e209c415274020f4d359a35bbcdf374d8383..a22f5bda875b467fee13b369c9a1c639ad5e5662 100644 (file)
--- a/parsimony.h
+++ b/parsimony.h
@@ -13,6 +13,7 @@
 
 #include "treecalculator.h"
 #include "treemap.h"
+#include "globaldata.hpp"
 
 /***********************************************************************/
 
@@ -22,10 +23,14 @@ class Parsimony : public TreeCalculator  {
                Parsimony(TreeMap* t) : tmap(t) {};
                ~Parsimony() {};
                EstOutput getValues(Tree*);
+               EstOutput getValues(Tree*, string, string) { return data; };
                
        private:
+               GlobalData* globaldata;
+               Tree* copyTree;
                EstOutput data;
                TreeMap* tmap;
+               map<string, int>::iterator it;
 };
 
 /***********************************************************************/