modified bin.seqs and get.oturep commands to include use of a groupfile if provided...

[mothur.git] / parsimony.h

diff --git a/parsimony.h b/parsimony.h
index 8955ef7a2253ec5a1f2985d09198431a66a8db2c..a22f5bda875b467fee13b369c9a1c639ad5e5662 100644 (file)
--- a/parsimony.h
+++ b/parsimony.h
@@ -23,12 +23,13 @@ class Parsimony : public TreeCalculator  {
                Parsimony(TreeMap* t) : tmap(t) {};
                ~Parsimony() {};
                EstOutput getValues(Tree*);
+               EstOutput getValues(Tree*, string, string) { return data; };
                
        private:
                GlobalData* globaldata;
+               Tree* copyTree;
                EstOutput data;
                TreeMap* tmap;
-               bool inUsersGroups(string);
                map<string, int>::iterator it;
 };