class Parsimony : public TreeCalculator {
public:
- Parsimony(TreeMap* t) : tmap(t) {};
+ Parsimony() {};
~Parsimony() {};
- EstOutput getValues(Tree*);
+ EstOutput getValues(Tree*, int, string);
private:
+ struct linePair {
+ int start;
+ int num;
+ linePair(int i, int j) : start(i), num(j) {}
+ };
+ vector<linePair> lines;
+
EstOutput data;
- TreeMap* tmap;
+ int processors;
+ string outputDir;
+
+ EstOutput driver(Tree*, vector< vector<string> >, int, int, TreeMap*);
+ EstOutput createProcesses(Tree*, vector< vector<string> >, TreeMap*);
};
/***********************************************************************/
-#endif
\ No newline at end of file
+
+#endif