fix weighted unifrac bug in findIndex and randomize labels

[mothur.git] / parsimony.cpp

diff --git a/parsimony.cpp b/parsimony.cpp
index 93efe2858aba11e852bd716f365bc653beea8b0d..3840514523002b545b7cf0f2fbb848b4c0ad0dd5 100644 (file)
--- a/parsimony.cpp
+++ b/parsimony.cpp
@@ -10,6 +10,7 @@
 #include "parsimony.h"
 
 /**************************************************************************************************/
+
 EstOutput Parsimony::getValues(Tree* t) {
        try {
                globaldata = GlobalData::getInstance();
@@ -22,7 +23,7 @@ EstOutput Parsimony::getValues(Tree* t) {
                for(int i=t->getNumLeaves();i<t->getNumNodes();i++){
                        t->tree[i].pGroups = (t->mergeUserGroups(i));
                }
-               //hjkl
+               
                for(int i=t->getNumLeaves();i<t->getNumNodes();i++){
                        int lc = t->tree[i].getLChild();
                        int rc = t->tree[i].getRChild();
@@ -38,12 +39,8 @@ EstOutput Parsimony::getValues(Tree* t) {
                        else if(iSize > rcSize || iSize > lcSize){
                                score++;
                        }
-                       cout << i << ' ' << score << ": ";
-                       t->tree[i].printNode();
                } 
                
-               string hold;
-               cin >> hold;
                
                data[0] = score;