public:
ParseListCommand(string);
ParseListCommand();
- ~ParseListCommand();
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+ ~ParseListCommand() {}
+
+ vector<string> setParameters();
+ string getCommandName() { return "parse.list"; }
+ string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Parse.list"; }
+ string getDescription() { return "parses a list file by group"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
private:
int parse(ListVector*);
set<string> labels;
bool abort, allLines;
vector<string> outputNames;
- map<string, vector<string> > outputTypes;
map<string, ofstream*> filehandles;
map<string, ofstream*>::iterator it3;