added name option to trim.seqs

[mothur.git] / parselistscommand.cpp

diff --git a/parselistscommand.cpp b/parselistscommand.cpp
index 6e4082e0c139b76435aa073cd1f0c7013b85dca3..b791be7efcbffa74c7aa2e7f325cc4e8d39e00fb 100644 (file)
--- a/parselistscommand.cpp
+++ b/parselistscommand.cpp
@@ -37,7 +37,7 @@ string ParseListCommand::getHelpString(){
                helpString += "The label parameter is used to read specific labels in your input you want to use.\n";
                helpString += "The parse.list command should be used in the following format: parse.list(list=yourListFile, group=yourGroupFile, label=yourLabels).\n";
                helpString += "Example: parse.list(list=abrecovery.fn.list, group=abrecovery.groups, label=0.03).\n";
-               helpString += "Note: No spaces between parameter labels (i.e. list), '=' and parameters (i.e.yourListfile).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. list), '=' and parameters (i.e.yourListfile).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -66,6 +66,7 @@ ParseListCommand::ParseListCommand(string option)  {
                        
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();