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[mothur.git] / parselistcommand.h

diff --git a/parselistcommand.h b/parselistcommand.h
index c986e4f812d4b97882c47bd772813cfd0bc4a4cb..bf8ee5daf24a014728b7ed12698ca744d56d1cd6 100644 (file)
--- a/parselistcommand.h
+++ b/parselistcommand.h
@@ -9,13 +9,9 @@
  *
  */
 
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
-#include <map>
 #include "command.hpp"
 #include "rabundvector.hpp"
-#include "listvector.hpp"
+#include "sharedlistvector.h"
 #include "inputdata.h"
 #include "groupmap.h"
 #include "readmatrix.hpp"
@@ -43,14 +39,14 @@ private:
        InputData* input;
        ReadMatrix* read;
        map<string, ofstream*> filehandles;
-       map<string, ListVector*> groupOfLists;
-       ListVector* list;
+       map<string, SharedListVector*> groupOfLists;
+       SharedListVector* list;
        map<string, string> listGroups; //maps group name to sequences from that group in a specific OTU
        map<string, string>::iterator it;
-       map<string, ListVector*>::iterator it2;
+       map<string, SharedListVector*>::iterator it2;
        map<string, ofstream*>::iterator it3;
        void parse(int);
        string fileroot;
 };
 
-#endif
\ No newline at end of file
+#endif