*
*/
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
-#include <map>
#include "command.hpp"
#include "rabundvector.hpp"
-#include "listvector.hpp"
+#include "sharedlistvector.h"
#include "inputdata.h"
#include "groupmap.h"
#include "readmatrix.hpp"
InputData* input;
ReadMatrix* read;
map<string, ofstream*> filehandles;
- map<string, ListVector*> groupOfLists;
- ListVector* list;
+ map<string, SharedListVector*> groupOfLists;
+ SharedListVector* list;
map<string, string> listGroups; //maps group name to sequences from that group in a specific OTU
map<string, string>::iterator it;
- map<string, ListVector*>::iterator it2;
+ map<string, SharedListVector*>::iterator it2;
map<string, ofstream*>::iterator it3;
void parse(int);
string fileroot;
};
-#endif
\ No newline at end of file
+#endif