public:
ParseFastaQCommand(string);
+ ParseFastaQCommand();
~ParseFastaQCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
private:
vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
string outputDir, fastaQFile;
bool abort;