added sff.multiple command. fixed issue with windows paralellization in chimera...

[mothur.git] / pairwiseseqscommand.h

diff --git a/pairwiseseqscommand.h b/pairwiseseqscommand.h
index ba82f47dfc7025481d3a6b7763a525aff690cece..0e749d5c7e252ceb7c777de1e8878084f61b0a4d 100644 (file)
--- a/pairwiseseqscommand.h
+++ b/pairwiseseqscommand.h
@@ -40,6 +40,7 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "pairwise.seqs";               }
        string getCommandCategory()             { return "Sequence Processing"; }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "Needleman SB, Wunsch CD (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 48: 443-53. [ for needleman ]\nGotoh O (1982). An improved algorithm for matching biological sequences. J Mol Biol 162: 705-8. [ for gotoh ] \nhttp://www.mothur.org/wiki/Pairwise.seqs"; }
        string getDescription()         { return "calculates pairwise distances from an unaligned fasta file"; }
@@ -115,7 +116,7 @@ struct pairwiseData {
 };
 
 /**************************************************************************************************/
-#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux) || (__linux__) || (__unix__) || (__unix)
 #else
 static DWORD WINAPI MyPairwiseSquareThreadFunction(LPVOID lpParam){ 
        pairwiseData* pDataArray;