helpString += "otu.hierarchy(list=yourListFile, label=yourLabels).\n";
helpString += "Example otu.hierarchy(list=amazon.fn.list, label=0.01-0.03).\n";
helpString += "The otu.hierarchy command outputs a .otu.hierarchy file which is described on the wiki.\n";
- helpString += "Note: No spaces between parameter labels (i.e. list), '=' and parameters (i.e.yourListFile).\n\n";
+ helpString += "Note: No spaces between parameter labels (i.e. list), '=' and parameters (i.e.yourListFile).\n";
return helpString;
}
catch(exception& e) {
//allow user to run help
if(option == "help") { help(); abort = true; calledHelp = true; }
+ else if(option == "citation") { citation(); abort = true; calledHelp = true;}
else {
vector<string> myArray = setParameters();