}
//map sequences to bin number in the "little" otu
- map<string, int> littleBins;
+ map<string, int> littleBins;
+ vector<string> binLabels0 = lists[0].getLabels();
for (int i = 0; i < lists[0].getNumBins(); i++) {
if (m->control_pressed) { return 0; }
-
string bin = lists[0].get(i);
vector<string> names; m->splitAtComma(bin, names);
for (int j = 0; j < names.size(); j++) { littleBins[names[j]] = i; }
m->openOutputFile(outputFileName, out);
//go through each bin in "big" otu and output the bins in "little" otu which created it
+ vector<string> binLabels1 = lists[1].getLabels();
for (int i = 0; i < lists[1].getNumBins(); i++) {
if (m->control_pressed) { outputTypes.clear(); out.close(); m->mothurRemove(outputFileName); return 0; }
string binnames = lists[1].get(i);
vector<string> names; m->splitAtComma(binnames, names);
-
//output column 1
if (output == "name") { out << binnames << '\t'; }
- else { out << (i+1) << '\t'; }
+ else { out << binLabels1[i] << '\t'; }
map<int, int> bins; //bin numbers in little that are in this bin in big
map<int, int>::iterator it;
string col2 = "";
for (it = bins.begin(); it != bins.end(); it++) {
if (output == "name") { col2 += lists[0].get(it->first) + "\t"; }
- else { col2 += toString(it->first) + "\t"; }
+ else { col2 += binLabels0[it->first] + "\t"; }
}
//output column 2