Merge remote-tracking branch 'origin/master'

[mothur.git] / otuassociationcommand.h

diff --git a/otuassociationcommand.h b/otuassociationcommand.h
index f1d047d97158c966bbeae80985b51c4725648885..7f7664be5eda5568f17723e8ccede599c1169f8b 100644 (file)
--- a/otuassociationcommand.h
+++ b/otuassociationcommand.h
@@ -25,6 +25,7 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "otu.association";                     }
        string getCommandCategory()             { return "Hypothesis Testing";          }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Otu.association"; }
        string getDescription()         { return "calculate the correlation coefficient for the otus in a shared/relabund file"; }
@@ -35,6 +36,7 @@ private:
        
        string sharedfile, relabundfile, metadatafile, groups, label, inputFileName, outputDir, method;
        bool abort, pickedGroups, allLines;
+    double cutoff;
        set<string> labels;
     vector<SharedRAbundFloatVector*> metadataLookup;
     vector< vector< double> > metadata;